FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19602052
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1885015396.16418219888408No Hit
NATAGCGA2783471.4199890909380304No Hit
CATAGCGC615110.3137987798420288No Hit
CATAGCGT349150.17811910712205029No Hit
CATAGCGG341910.17442561625691025No Hit
CATCGCGA294090.1500302111227947No Hit
CATAGCAA266700.1360571842172442No Hit
CCTAGCGA255660.13042512079857763No Hit
CGTAGCGA234900.11983439284825896No Hit
CAGAGCGA207810.10601441114430266No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)