FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17614048
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1692833196.106988013204No Hit
NATGCTTA3212001.8235444799514569No Hit
CATGCTAA389650.2212154752842731No Hit
CNTGCTTA312740.17755146346824988No Hit
CCTGCTTA288840.1639827483154355No Hit
CATGCTTC241720.13723137350369433No Hit
CGTGCTTA186300.10576785075185444No Hit
CATGCGTA182380.10354235437532587No Hit
CATGCTTT178950.1015950450458634No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)