FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22408359
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2155171296.1771096223512No Hit
NGTCCAGA4120261.8387156328582561No Hit
GGTCCAGC467440.2086007279694153No Hit
GGCCCAGA456570.20374985959480565No Hit
GGGCCAGA447240.19958623476176904No Hit
GGTCCCGA333170.14868112386096635No Hit
GGACCAGA299330.13357961642795887No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)