FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18654096
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1795446096.2494242551341No Hit
NACATCCT2985131.6002544427776075No Hit
CACATCCA576450.3090206033034246No Hit
CCCATCCT380240.20383726984143322No Hit
CACAGCCT256740.13763197101590985No Hit
CACCTCCT244340.13098463736865082No Hit
TACATCCT196310.10523694099140478No Hit
CGCATCCT194280.10414870814431318No Hit
CACATCCC192080.10296934249721884No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)