FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21496973
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2067575296.17982959740425No Hit
NTGAGCCT3105911.4448127185162303No Hit
TTGCGCCT474000.22049616008728298No Hit
TTGAGCCC362400.1685818742945809No Hit
GTGAGCCT339400.157882693530852No Hit
TTGAGCCG299750.139438236257728No Hit
TTGGGCCT298350.13878698177645757No Hit
TTGAGCCA287060.13353507956678368No Hit
TTTAGCCT279950.13022763716547442No Hit
TGGAGCCT273270.12712022292626968No Hit
TTGTGCCT243520.11328106519927247No Hit
TTCAGCCT230660.10729882760703101No Hit
TTGAGCGT225610.104949659656734No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)