FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18773133
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1802653396.02303994756763No Hit
NGCAATTC3407051.8148542387677113No Hit
AGCACTTC505670.2693583431172623No Hit
AGCAATTA375640.20009446478645837No Hit
ANCAATTC327070.1742223847239563No Hit
AGCAGTTC261700.13940134552927314No Hit
AGCATTTC245070.13054294134069153No Hit
CGCAATTC227950.12142352584408793No Hit
AGCAATTT216370.11525513615654882No Hit
AGCAATCC194920.10382923297885334No Hit
AGCCATTC189440.10091016773811808No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)