FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21150221
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2031191896.03643385097489No Hit
NGTCGGAT3899101.8435268359607213No Hit
TGTCGGCT639110.30217651153621516No Hit
TGTCGGGT399720.18899093300254402No Hit
TGCCGGAT396290.18736920053932296No Hit
TNTCGGAT364660.17241427406361381No Hit
TGGCGGAT327480.15483526153225538No Hit
TGTCGGTT264230.12493013666382019No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)