FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22264863
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2142631196.23374282608431No Hit
NTGAGCCT4344091.9510966674261592No Hit
TTGCGCCT391590.17587801910121792No Hit
TNGAGCCT295760.13283710750881333No Hit
TTGAGCCC285640.12829182914801676No Hit
TTGGGCCT241770.10858813728159926No Hit
TTTAGCCT223130.10021620164471706No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)