FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18104980
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1724540295.25225656145436No Hit
NGCAATTC3481861.9231504260153836No Hit
AGCACTTC555890.3070370693588173No Hit
AGCAATTA413140.22819135950440153No Hit
AGCAATTT326320.1802377025547667No Hit
AGCAGTTC304110.16797035953643694No Hit
AGCATTTC303800.16779913592834678No Hit
AGCAATGC282930.15627192076434218No Hit
AGCAATCC264510.14609792443846942No Hit
AGCCATTC243350.13441053235076758No Hit
CGCAATTC214770.11862482035329507No Hit
AGCGATTC206510.11406253969902204No Hit
AGCAAGTC192760.10646794417889442No Hit
AGGAATTC187880.10377255318702369No Hit
AGCTATTC185130.10225363408299815No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)