FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20109834
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1936036596.2731218964811No Hit
NGTCGGAT3261331.6217587872679604No Hit
TGTCGGCT644350.32041537488573996No Hit
TGTCGGGT431180.21441251081436075No Hit
TGCCGGAT401360.1995839448500669No Hit
TGGCGGAT341960.1700461575167652No Hit
TGTCGGTT279830.13915082541208446No Hit
TGTTGGAT212600.10571942065757481No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)