FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21114185
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2028844996.0891883821232No Hit
NGTCGGAT4123611.9530045796226567No Hit
TGTCGGCT576690.2731291783225353No Hit
TGCCGGAT382610.18120993066983168No Hit
TGTCGGGT375390.17779042856733518No Hit
TGGCGGAT315520.14943508357059485No Hit
TNTCGGAT283830.1344262163090832No Hit
TGTCGGTT239770.11355872840936082No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)