FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19955787
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1916788996.05178187159444No Hit
NATAGCGA3658871.833488200690857No Hit
CATAGCGC515210.2581757361912111No Hit
CATAGCGT292390.14651890201073No Hit
CAGAGCGA270550.13557470822874587No Hit
CATCGCGA246190.1233677228565328No Hit
CCTAGCGA245050.12279645999428636No Hit
CATAGCGG243040.12178923336874663No Hit
CACAGCGA222390.11144135783770392No Hit
CATAGCAA219460.10997311206017582No Hit
CGTAGCGA216670.10857502137099379No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)