FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20190454
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1945858996.37519295009413No Hit
NATAGCGA3492671.7298620427257356No Hit
CATAGCGC497420.2463639500132092No Hit
CATAGCGT299480.14832752151090808No Hit
CATCGCGA244710.12120084075375422No Hit
CATAGCGG244200.12094824613651581No Hit
CATAGCAA221430.109670639402165No Hit
CCTAGCGA212510.10525271001830866No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)