FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18713637
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1801175796.24936617077697No Hit
NGCAATTC3246481.7348204413711776No Hit
AGCACTTC492610.2632358423966437No Hit
AGCAATTA363110.19403497032671949No Hit
AGCAGTTC253210.1353077437592703No Hit
AGCATTTC237840.12709448195452333No Hit
CGCAATTC228070.12187369029334062No Hit
AGCAATTT200150.10695408914899868No Hit
AGCAATCC192280.10274859985795386No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)