FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21878502
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2105950596.2566129984585No Hit
NGTCCAGA3130161.4307012427084815No Hit
GGTCCAGC577580.26399430820263653No Hit
GGGCCAGA404300.18479327332374035No Hit
GGCCCAGA386200.1765203120396451No Hit
GGTCCCGA376140.17192219101655132No Hit
GGTCCAGG316520.14467169644429953No Hit
TGTCCAGA275380.12586784963614053No Hit
GGTCCAGT255040.116571052259428No Hit
GGACCAGA221300.10114952111437976No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)