FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16261709
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1562278396.07097876367115No Hit
NTCGCTGA3014831.853944133424107No Hit
TTCGCTGC420020.25828773593230575No Hit
TTCGCTAA303930.18689917523428812No Hit
TTGGCTGA234420.14415459039391249No Hit
TTCGCTGG225630.13874925446027844No Hit
TTCGCTGT215620.1325936898760149No Hit
TTTGCTGA211330.12995559076847335No Hit
GTCGCTGA188390.11584883237057064No Hit
TTAGCTGA179290.11025286456669467No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)