FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18611467
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1777599195.51096106502513No Hit
NACTTGAC3597961.9331952714957932No Hit
AACTTGCC477600.25661598841187533No Hit
AGCTTGAC395330.2124120575771915No Hit
CACTTGAC383500.2060557612143094No Hit
ACCTTGAC322990.1735435471045888No Hit
AACTTGGC306020.1644255125079608No Hit
TACTTGAC297220.15969724471477717No Hit
AACTTGTC248120.1333156596414458No Hit
GACTTGAC217960.11711059638662552No Hit
AACTTGAA201090.10804629210582917No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)