FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16439935
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1585413096.4366951572497No Hit
NTCGCTGA2872151.7470567858084596No Hit
TTCGCTGC396330.2410775955014421No Hit
TTCGCTAA305380.1857549923402982No Hit
TTCGCTGG220470.13410636964197245No Hit
GTCGCTGA217980.13259176511342655No Hit
TTCGCTGT211910.12889953640327653No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)