FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18691190
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA28150.084.419111
TTACGCG13000.083.647169
CGCCGAA31400.078.708721
ACGACCG25450.076.136671
GTGCGAC34750.073.4355551
TTTGCGC28850.070.458721
GTTACGC28800.068.971298
GCGCGTA31300.068.447731
TCGCGAT20000.068.1456458
GACGCGT29150.067.225191
CCGCTAT36000.066.6203841
TTACCCG35250.066.378381
ACGCCGA38900.065.789141
CGGTACG29800.065.51351
CGAACGC34550.065.395251
ATAACGC34050.063.7786181
AACGCGT24750.063.5639843
TCACGCG28900.063.4648068
GCGCTAG32100.063.097261
GCCGGAT37450.062.4789851
Produced by FastQC (version 0.11.5)