FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20172065
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1938860296.11609916981728No Hit
NGTCGGAT3466461.7184457813317577No Hit
TGTCGGCT672210.33323806957790386No Hit
TGTCGGGT454180.22515295285832165No Hit
TGCCGGAT406590.20156092100635212No Hit
TGGCGGAT342520.16979917524556856No Hit
TGTCGGTT291690.14460096177560403No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)