FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17393829
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1669945296.00791177146792No Hit
NATGCTTA3214941.8483221836893993No Hit
CATGCTAA387090.22254444377945767No Hit
CCTGCTTA295930.17013505191985043No Hit
CAGGCTTA290090.16677753932156053No Hit
CACGCTTA279740.16082715312424883No Hit
CATGCTTC238210.13695086918469765No Hit
CGTGCTTA210220.1208589552076199No Hit
CAAGCTTA176640.10155325776745304No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)