FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18390848
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1762367495.82850121973712No Hit
NGGATCTA3335521.8136847197040613No Hit
AGGCTCTA417240.2268737145780336No Hit
AGGTTCTA328960.17887157786307625No Hit
AGGATCTC309740.16842072752708304No Hit
CGGATCTA307850.16739304245241982No Hit
ANGATCTA307200.16703960578653035No Hit
AGGGTCTA293700.15969899811036445No Hit
AGGAGCTA277860.1510860184369965No Hit
AGGATGTA259150.14091247994654732No Hit
AGGATCAA187550.10198007182703049No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)