FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17717292
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1683777195.03580456877947No Hit
NGGATCTA3404801.9217383785287276No Hit
AGGCTCTA484230.2733092619346117No Hit
AGGTTCTA459350.25926648383962964No Hit
AGGGTCTA431270.24341756065204548No Hit
AGGATCTC358190.20216972209974302No Hit
AGGAGCTA355380.20058370094030173No Hit
CGGATCTA293460.1656347933984494No Hit
AGGATGTA287360.16219182931567647No Hit
AGGATCTT247630.13976740915033742No Hit
AGGATCAA240540.1357656689295407No Hit
AGTATCTA223440.12611408109094777No Hit
TGGATCTA190700.10763495911226162No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)