FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20395321
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1941762295.20625833739022No Hit
NGTCGGAT3959141.9412001409538981No Hit
TGTCGGCT779020.3819601564496092No Hit
TGTCGGGT583780.28623231769678936No Hit
TGGCGGAT487060.23880967600362848No Hit
TGCCGGAT484660.23763293551496445No Hit
TGTCGGTT399110.19568704017946079No Hit
TGTTGGAT328620.16112519141032397No Hit
TGTCGGAG230120.1128298005214039No Hit
TGACGGAT224150.1099026585558521No Hit
TGTCGGAA213140.10450436156410582No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)