FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22680675
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2188977696.51289478818421No Hit
NGTCCAGA3940001.7371617026389206No Hit
GGTCCAGC451350.19900201382895352No Hit
GGTCCCGA326700.14404333204368916No Hit
GGCCCAGA296830.13087352999855603No Hit
GGGCCAGA265860.1172187335694374No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)