FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18871123
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1797590495.25614347381446No Hit
NACATCCT3622771.9197426671428086No Hit
CACATCCA595340.31547672070178334No Hit
CCCATCCT445060.2358418203304594No Hit
CGCATCCT337410.17879699051296524No Hit
CACCTCCT302950.1605362860493252No Hit
CACAGCCT298100.15796622172405955No Hit
CACTTCCT244190.12939876445084905No Hit
CACATTCT236400.1252707642253193No Hit
CACGTCCT232860.12339488222296044No Hit
TACATCCT230620.12220788344180682No Hit
CACATGCT224550.11899132870894857No Hit
CACATCGT213560.11316761593891365No Hit
CACATCCC211880.11227736685304843No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)