FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17020744
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1622942195.35083190253023No Hit
NATGCTTA3282531.9285467192268444No Hit
CATGCTAA434250.2551298580132572No Hit
CCTGCTTA322560.18950992976570238No Hit
CGTGCTTA310440.18238920695828573No Hit
CATGCTTC292000.1715553679674637No Hit
CAGGCTTA273740.16082728228566273No Hit
CATGCGTA246040.14455302306409168No Hit
CATGCTTT243550.14309010228930064No Hit
CACGCTTA232160.13639826790180265No Hit
CATTCTTA222150.13051720888346596No Hit
CATGCTGA219270.12882515593912933No Hit
TATGCTTA205860.12094653441706192No Hit
CATGCCTA193730.11381993642581077No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)