FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18947969
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1818629895.9801971388068No Hit
NACATCCT2691891.420674690780843No Hit
CACATCCA660340.34850173124095785No Hit
CCCATCCT429090.22645698860917496No Hit
CACAGCCT322480.17019238315198848No Hit
CACCTCCT272330.14372516653367967No Hit
CACATCCC262130.13834200383165077No Hit
CGCATCCT250410.1321566443348097No Hit
CACATCCG209060.11033372494962387No Hit
CACATGCT202470.10685577963527385No Hit
TACATCCT193090.10190538099360412No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)