FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21427027
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2043708795.37994701738135No Hit
NTGAGCCT4151001.9372729590530688No Hit
TTGCGCCT504390.23539896598814197No Hit
TTTAGCCT408140.19047906179424706No Hit
TTGGGCCT406570.18974634231804535No Hit
TGGAGCCT367370.17145169042816813No Hit
TTGTGCCT364990.17034094370628272No Hit
GTGAGCCT319070.14891006577814084No Hit
TTGAGCCC307290.14341233620511143No Hit
TTCAGCCT273090.12745118583180018No Hit
TTGAGCGT267600.12488900116661074No Hit
TTGAGCCG256990.11993731094845775No Hit
TTGATCCT236150.11021127662741079No Hit
TTGAGCCA230880.10775176602895026No Hit
TTGAGCTT229150.10694437450421844No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)