FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18329556
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1760742396.06028100189661No Hit
NGGATCTA3175261.7323169202789201No Hit
AGGCTCTA407990.22258586078135223No Hit
AGGTTCTA316460.1726501176569689No Hit
CGGATCTA304210.16596692249392184No Hit
AGGATCTC291890.1592455376442288No Hit
AGGGTCTA279260.15235502703938927No Hit
AGGAGCTA262120.14300400948064426No Hit
AGGATGTA250740.13679545756591158No Hit
AGGATCAA184830.10083713975395803No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)