FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18156804
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1739164195.78580569576012No Hit
NGGATCTA3342931.841144509793684No Hit
AGGCTCTA416770.22953929557206215No Hit
CGGATCTA304260.16757354433081947No Hit
AGGATCTC303270.167028294186576No Hit
AGGTTCTA301050.16580561204493918No Hit
AGGGTCTA266750.14691462219892884No Hit
AGGAGCTA255070.14048177201229908No Hit
AGGATGTA248620.1369293847088948No Hit
AGCATCTA204240.11248675703058753No Hit
AGGATCAA181630.10003412494842155No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)