FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21967533
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2111784696.13207819011812No Hit
NTGAGCCT4064951.850435367503488No Hit
TTGCGCCT411570.18735376430298295No Hit
TTCAGCCT316510.14408081235157355No Hit
TTTAGCCT307160.13982453104770573No Hit
TTGAGCCC292700.13324208958739245No Hit
GTGAGCCT256010.11654016862066396No Hit
TTGGGCCT238020.10835081026167118No Hit
TGGAGCCT224820.10234194253856363No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)