FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21071221
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2029124996.29840150221955No Hit
NGTCGGAT3679351.746149404441252No Hit
TGTCGGCT601820.2856123050486728No Hit
TGTCGGGT383700.18209670906114078No Hit
TGCCGGAT369660.1754335925763391No Hit
TGGCGGAT304590.1445526104063927No Hit
TGTCGGTT248840.11809472265513232No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)