FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20843615
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2000180395.96129558140466No Hit
NGTCGGAT3870821.8570770953119216No Hit
TGTCGGCT611020.2931449271155699No Hit
TGCCGGAT522240.25055154780012967No Hit
TGGCGGAT477010.2288518570315178No Hit
TGTCGGGT363500.17439393310613344No Hit
TGACGGAT282040.13531242061417847No Hit
TGTCGGTT235160.11282112052060067No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)