FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16788475
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1617787696.36298710871594No Hit
NATGCTTA2688511.6014021523694082No Hit
CATGCTAA378420.22540463025974666No Hit
CATGCTTC266890.15897215202691134No Hit
CCTGCTTA264360.1574651658354913No Hit
CATGCTTT196210.11687184214170733No Hit
CATGCGTA188760.11243427410768399No Hit
CGTGCTTA178350.10623359179437085No Hit
TATGCTTA177310.10561411920975551No Hit
CACGCTTA168010.10007460475117602No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)