FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17533128
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1683883396.04009621101267No Hit
NGGATCTA2796591.5950319874468493No Hit
AGGCTCTA426040.2429914388351012No Hit
AGGTTCTA342370.19527034765274057No Hit
AGGATCTC332420.18959537625003364No Hit
AGGGTCTA305100.17401344472018912No Hit
AGGAGCTA299350.1707339386331977No Hit
CGGATCTA297810.16985560135076866No Hit
AGGATGTA260770.14872987866169687No Hit
AGGATCTT195980.11177697442236205No Hit
AGGATCAA178550.1018357933621428No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)