FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17818932
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1707240695.81048965224178No Hit
NGGATCTA2536021.423216610288428No Hit
AGGCTCTA461560.25902786990825266No Hit
AGGATCTC378180.21223494202682855No Hit
AGGAGCTA363980.20426588978508928No Hit
AGGTTCTA339080.19029198831894079No Hit
AGGGTCTA329060.18466875568075572No Hit
CGGATCTA298780.16767559357653983No Hit
AGGATGTA277050.15548069884323035No Hit
AGGATCAA229650.12887977797995975No Hit
AGGATCTT209500.11757158060875926No Hit
AGGACCTA195240.10956885631529431No Hit
AGGATCTG193080.10835666245317059No Hit
GGGATCTA184870.10374920337537624No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)