FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19310636
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1858655796.2503617177601No Hit
NACTTGAC3542261.8343569833743436No Hit
CACTTGAC395530.20482494724668832No Hit
AACTTGCC365210.1891237554268021No Hit
ANCTTGAC340850.17650894564011252No Hit
ACCTTGAC274560.14218071326081647No Hit
TACTTGAC259700.13448547215120207No Hit
AGCTTGAC251410.13019250116878595No Hit
GACTTGAC209590.10853604200296665No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)