FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18508478
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1775211695.91342951051945No Hit
NGCAATTC3406471.8404916925097783No Hit
AGCACTTC509420.27523602967245603No Hit
AGCAATTA371920.20094575037450405No Hit
AGCAGTTC245930.13287424281996607No Hit
AGGAATTC239870.1296000676014527No Hit
AGCATTTC231190.12491032487922563No Hit
CGCAATTC228490.123451533940284No Hit
AGCAATTT203480.10993880750216198No Hit
AGAAATTC201690.10897168313893774No Hit
AGCAATCC197260.10657818541319282No Hit
AGCCATTC188610.1019046514791762No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)