FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22730007
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2188518196.28321275923936No Hit
NGTCCAGA4410891.9405581353318546No Hit
GGTCCAGC467430.20564445932638736No Hit
GGTCCCGA321380.1413901896290661No Hit
GGCCCAGA308670.13579846235859055No Hit
GNTCCAGA277740.1221908994572681No Hit
GGGCCAGA269030.11835896047018375No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)