FastQCFastQC Report
Wed 8 May 2024
EGAF00005486398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17925666
Total Bases143.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1722562396.09474482008088No Hit
NGCAATTC3036671.6940346874699104No Hit
AGCACTTC522630.2915540209217331No Hit
AGCAATTA374430.20887926841881357No Hit
AGCAGTTC271180.15128029273779842No Hit
AGCATTTC254270.14184689149067042No Hit
AGCAATTT243580.13588337526761907No Hit
CGCAATTC225100.12557413487454247No Hit
AGCAATCC214960.11991744128223743No Hit
AGCCATTC185840.10367257763254097No Hit
AGCAATGC185260.10334901922193573No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)