FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21720540
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2092240196.32541824466611No Hit
NGTCCAGA3694391.7008739193408635No Hit
GGTCCAGC505880.2329039701591213No Hit
GGTCCCGA378090.17407025792176437No Hit
GGCCCAGA328730.1513452243820826No Hit
GGGCCAGA295150.13588520359070264No Hit
GGTCCAGT237040.10913172508602456No Hit
GGTCCAGG235130.10825237309937967No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)