FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19270138
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1855413196.28437014825737No Hit
NACTTGAC3756511.9493944464746438No Hit
CACTTGAC375480.19485070631045817No Hit
AACTTGCC340450.17667232066526975No Hit
ANCTTGAC257840.13380288195133838No Hit
ACCTTGAC254190.13190875955325282No Hit
AGCTTGAC232050.12041948013034467No Hit
TACTTGAC231370.12006660253289311No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)