FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19575206
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1879671696.02308144292326No Hit
NACATCCT3790471.936362764202839No Hit
CACATCCA606160.3096570222556023No Hit
CCCATCCT383480.1959008758324178No Hit
CNCATCCT256050.13080322117682952No Hit
CACAGCCT242550.12390674202866626No Hit
CACCTCCT222860.11384809947849335No Hit
CGCATCCT196310.10028502382043898No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)