FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16842266
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1620001696.1866770184012No Hit
NATGCTTA2874191.7065340257658916No Hit
CATGCTAA392960.23331777327350134No Hit
CCTGCTTA261950.155531328147887No Hit
CATGCTTC255400.151642302763773No Hit
CATGCGTA215350.12786284220899966No Hit
CATGCTTT193180.11469953033635735No Hit
CATGCCTA183620.10902333450855128No Hit
CACGCTTA179520.10658898274139596No Hit
CGTGCTTA178850.10619117403798278No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)