FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19234358
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1856240196.5064755475592No Hit
NACTTGAC3352041.7427355776574398No Hit
CACTTGAC383550.19940878712978097No Hit
AACTTGCC351810.1829070666148566No Hit
TACTTGAC264890.1377170997857064No Hit
ACCTTGAC249430.12967939974913642No Hit
AGCTTGAC231600.12040952965521386No Hit
GACTTGAC204240.10618498418299172No Hit
ANCTTGAC197190.10251966818960113No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)