FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17878607
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1720729296.24514930050199No Hit
NGCAATTC2868101.6042077551120175No Hit
AGCACTTC531030.297019784595075No Hit
AGCAATTA378060.21145942745986868No Hit
AGCAGTTC273480.15296493736900196No Hit
AGCATTTC256260.14333331450263437No Hit
AGCAATTT251910.140900239039876No Hit
CGCAATTC225210.1259661896477729No Hit
AGCAATCC198860.11122790494807566No Hit
AGCCATTC192220.10751396906929046No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)