FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17567730
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1692451496.33865046878567No Hit
NATGCTTA3063791.7439874132856095No Hit
CATGCTAA389930.22195810158739918No Hit
CCTGCTTA259230.14756032794219856No Hit
CATGCTTC230440.1311723256220354No Hit
CNTGCTTA180250.10260289747167108No Hit
CGTGCTTA176140.10026338064166515No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)