FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18347006
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1771301896.5444607147346No Hit
NACTTGAC2963211.615091857494351No Hit
CACTTGAC387930.21144049334261952No Hit
AACTTGCC374140.20392428061559473No Hit
TACTTGAC271650.14806230509762736No Hit
ACCTTGAC240090.1308605883706584No Hit
AGCTTGAC230380.12556817172240528No Hit
GACTTGAC202950.11061750347713407No Hit
AACTTGGC192920.10515067145015378No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)