FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21221887
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2046543096.43548662755579No Hit
NTGAGCCT3436341.6192433783103266No Hit
TTGCGCCT428820.2020649718849224No Hit
GTGAGCCT288340.13586916187047834No Hit
TTGAGCCC283460.13356964910801758No Hit
TTGGGCCT271260.1278208672018657No Hit
TTTAGCCT249100.11737881744446194No Hit
TTGTGCCT246290.1160547127595204No Hit
TTGAGCCG213630.10066494086977279No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)